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  1. www.targetscan.orgTargetScanHuman 8.0

    TargetScanHuman 8.0 is a database that searches for conserved and nonconserved sites that match the seed region of human microRNAs in 3' UTRs and ORFs. It provides options to rank predictions by targeting efficacy, probability, or seed pairing, and to download data, code, or analysis tools.

    • 3' UTRs

      3' UTRs - TargetScanHuman 8.0

    • Targetscanmouse 8.0

      Targetscanmouse 8.0 - TargetScanHuman 8.0

    • FAQs

      For TargetScanHuman, we start with the representative...

    • Targetscanfly 7.2

      References: 1) Conserved Seed Pairing, Often Flanked by...

  2. www.targetscan.org › vert_72TargetScanHuman 7.2

    TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer, 7mer, and 6mer sites that match the seed region of each miRNA (Lewis et al., 2005). As an option, predictions with only poorly conserved sites are also provided.

  3. www.targetscan.org › mmu_80TargetScanMouse 8.0 - TargetScanHuman 8.0

    TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer, 7mer, and 6mer sites that match the seed region of each miRNA (Lewis et al., 2005). As options, predictions with only poorly conserved sites and predictions with nonconserved miRNAs are also provided.

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  5. www.ncbi.nlm.nih.gov › pmc › articlesTools for Sequence-Based miRNA Target Prediction: What to Choose?

    Dec 9, 2016 · In 2009 Friedman et al. developed an algorithm of preferentially conserved targeting (P CT) called TargetScan P CT, which is an improved method for quantitatively evaluating site conservation (TargetScan v5.0) . This new algorithm incorporates a phylogenetic tree based on the UTR genomic regions, using a branch-length metric to evaluate motif ...

  6. www.ncbi.nlm.nih.gov › pmc › articlesmiRNA Targets: From Prediction Tools to Experimental Validation

    Dec 24, 2020 · TargetScan primarily predicts potential miRNA targets by looking for the presence of 8mer, 7mer, and 6mer sites that match the seed region of every miRNA. It is possible to choose to include only conserved sites.

  7. tools4mirs.org › software › target_predictionTools4miRs - TargetScan

    Aug 12, 2015 · TargetScan predicts biological targets of miRNAs by searching for seed region matches in human 3' UTRs and ORFs. It ranks predictions based on targeting efficacy, conservation, and context++ scores.

  8. bio.tools › TargetScanHumanbio.tools

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